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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10985 and 10986 are separated by 101 nucleotides
10986 and 10987 are separated by 482 nucleotides
10987 and 10988 are separated by 543 nucleotides
10988 and 10989 are separated by 338 nucleotides
mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605,466 to 606,411
10985
mRNA_2618: 10986 - Hypothetical Protein, at 606,513 to 607,761
10986
mRNA_2619: 10987 - Hypothetical Protein, at 608,244 to 608,759
10987
mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609,303 to 611,052
10988
mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611,391 to 613,373
10989
Group
Condition
mRNA
_2617
mRNA
_2618
mRNA
_2619
mRNA
_2620
mRNA
_2621
10985
10986
10987
10988
10989
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
N.D.
+0.3
+0.3
-0.0
growth on ypd
YPD
-0.5
N.D.
+0.1
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.1
-0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.5
N.D.
-0.0
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.2
+0.5
+0.2
auxotrophy
Dropout Complete
+0.2
N.D.
-0.1
-0.0
+0.4
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.0
+0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.0
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.4
+0.2
+0.5
auxotrophy
YNB Glucose
+0.3
N.D.
-0.1
+0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.7
N.D.
+0.2
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.1
+0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+1.5
N.D.
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.9
N.D.
+0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.1
+0.1
+1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
+0.2
+0.6
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-0.1
+0.0
+1.7
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