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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10987 and 10988 are separated by 543 nucleotides
10988 and 10989 are separated by 338 nucleotides
10989 and 10990 are separated by 345 nucleotides
10990 and 10991 are separated by 310 nucleotides
mRNA_2619: 10987 - Hypothetical Protein, at 608,244 to 608,759
10987
mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609,303 to 611,052
10988
mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611,391 to 613,373
10989
mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613,719 to 614,794
10990
mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615,105 to 616,887
10991
Group
Condition
mRNA
_2619
mRNA
_2620
mRNA
_2621
mRNA
_2622
mRNA
_2623
10987
10988
10989
10990
10991
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
-0.1
-0.2
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
-0.0
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.0
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.2
-0.1
+0.4
auxotrophy
YNB Glucose
-0.1
+0.2
+0.4
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.4
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.5
+0.2
-0.1
-0.5
auxotrophy
Dropout Complete
-0.1
-0.0
+0.4
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.6
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.3
+0.1
-0.2
growth on ypd
YPD
+0.1
+0.2
+0.2
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.0
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
+0.4
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
+0.2
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.5
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.4
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.2
+0.5
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.6
+0.5
+0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+1.2
+0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
+1.7
+0.3
+0.1
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