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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10989 and 10990 are separated by 345 nucleotides
10990 and 10991 are separated by 310 nucleotides
10991 and 10992 are separated by 93 nucleotides
10992 and 10993 are separated by 361 nucleotides
mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611,391 to 613,373
10989
mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613,719 to 614,794
10990
mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615,105 to 616,887
10991
mRNA_2624: 10992 - SUPERFAMILY--SSF52058, at 616,981 to 618,073
10992
mRNA_2625: 10993 - K20784 XEG113 arabinosyltransferase, at 618,435 to 621,494
10993
Group
Condition
mRNA
_2621
mRNA
_2622
mRNA
_2623
mRNA
_2624
mRNA
_2625
10989
10990
10991
10992
10993
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
-0.4
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-0.5
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
-0.3
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.5
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.4
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
+0.0
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
+0.3
+0.1
-0.3
auxotrophy
YNB Glucose
+0.4
-0.4
+0.0
+0.1
-0.0
auxotrophy
Dropout Complete
+0.4
-0.3
+0.3
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.1
-0.2
-0.1
+0.1
growth on ypd
YPD
+0.2
-0.2
+0.3
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
-0.0
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.2
-0.1
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
+0.2
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.5
+0.3
-0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
-0.4
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
-0.2
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
+0.3
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
+0.4
-0.1
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.7
+0.3
+0.1
+0.2
+0.2
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