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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10990 and 10991 are separated by 310 nucleotides
10991 and 10992 are separated by 93 nucleotides
10992 and 10993 are separated by 361 nucleotides
10993 and 10994 are separated by 283 nucleotides
mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613,719 to 614,794
10990
mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615,105 to 616,887
10991
mRNA_2624: 10992 - SUPERFAMILY--SSF52058, at 616,981 to 618,073
10992
mRNA_2625: 10993 - K20784 XEG113 arabinosyltransferase, at 618,435 to 621,494
10993
mRNA_2626: 10994 - Interpro GDP-fucose protein O-fucosyltransferase, at 621,778 to 623,321
10994
Group
Condition
mRNA
_2622
mRNA
_2623
mRNA
_2624
mRNA
_2625
mRNA
_2626
10990
10991
10992
10993
10994
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.2
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
-0.0
-0.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.5
+0.2
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.5
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
+0.1
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
+0.2
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.1
-0.0
-0.3
auxotrophy
Dropout Complete
-0.3
+0.3
-0.1
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.1
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+0.0
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.2
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
+0.2
-0.3
+0.1
auxotrophy
YNB Glucose
-0.4
+0.0
+0.1
-0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
+0.0
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
-0.0
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
+0.0
-0.1
-0.0
growth on ypd
YPD
-0.2
+0.3
+0.0
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
+0.2
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.2
+0.4
+0.2
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