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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10991 and 10992 are separated by 93 nucleotides
10992 and 10993 are separated by 361 nucleotides
10993 and 10994 are separated by 283 nucleotides
10994 and 10995 are separated by 928 nucleotides
mRNA_2623: 10991 - K00306 PIPOX sarcosine oxidase / L-pipecolate oxidase, at 615,105 to 616,887
10991
mRNA_2624: 10992 - SUPERFAMILY--SSF52058, at 616,981 to 618,073
10992
mRNA_2625: 10993 - K20784 XEG113 arabinosyltransferase, at 618,435 to 621,494
10993
mRNA_2626: 10994 - Interpro GDP-fucose protein O-fucosyltransferase, at 621,778 to 623,321
10994
mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624,250 to 625,308
10995
Group
Condition
mRNA
_2623
mRNA
_2624
mRNA
_2625
mRNA
_2626
mRNA
_2627
10991
10992
10993
10994
10995
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.2
-0.7
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.2
-0.4
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
+0.0
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.0
-0.5
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
-0.1
+0.1
-0.6
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.1
-0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
-0.3
-0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.2
-0.2
+0.3
auxotrophy
Dropout Complete
+0.3
-0.1
-0.0
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.2
+0.1
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.2
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
-0.3
-0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.0
-0.0
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.0
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
+0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.2
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.3
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose
+0.0
+0.1
-0.0
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
+0.4
+0.2
-0.5
growth on ypd
YPD
+0.3
+0.0
+0.0
+0.1
+0.4
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