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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10994 and 10995 are separated by 928 nucleotides
10995 and 10996 are separated by 627 nucleotides
10996 and 10997 are separated by 405 nucleotides
10997 and 10998 are separated by 260 nucleotides
mRNA_2626: 10994 - Interpro GDP-fucose protein O-fucosyltransferase, at 621,778 to 623,321
10994
mRNA_2627: 10995 - K05941 E2.3.2.15 glutathione gamma-glutamylcysteinyltransferase, at 624,250 to 625,308
10995
mRNA_2628: 10996 - K09468 MSN2_4 zinc finger protein MSN2/4, at 625,936 to 628,159
10996
mRNA_2629: 10997 - Hypothetical Protein, at 628,565 to 629,191
10997
mRNA_2630: 10998 - KOG1581 UDP-galactose transporter related protein, at 629,452 to 632,288
10998
Group
Condition
mRNA
_2626
mRNA
_2627
mRNA
_2628
mRNA
_2629
mRNA
_2630
10994
10995
10996
10997
10998
auxotrophy
Dropout Complete
+0.1
-0.5
-0.2
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.0
-0.2
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
-0.2
-0.4
-0.2
growth on oleic acid
YNB Glucose
-0.0
-0.4
-0.2
+0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.6
+0.1
-0.0
-0.3
auxotrophy
YNB Glucose
+0.3
+0.0
-0.4
-0.4
-0.1
growth on ypd
YPD
+0.1
+0.4
-0.2
-0.7
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.5
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.3
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.2
-0.1
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
+0.0
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
-0.2
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.5
+0.0
+0.6
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
-0.2
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
+0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
+0.5
+0.5
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
+0.5
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
+0.0
+0.2
+0.0
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