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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10997 and 10998 are separated by 260 nucleotides
10998 and 10999 are separated by 476 nucleotides
10999 and 11000 are separated by 1277 nucleotides
11000 and 11001 are separated by 127 nucleotides
mRNA_2629: 10997 - Hypothetical Protein, at 628,565 to 629,191
10997
mRNA_2630: 10998 - KOG1581 UDP-galactose transporter related protein, at 629,452 to 632,288
10998
mRNA_2631: 10999 - K14803 PTC2_3 protein phosphatase PTC2/3, at 632,765 to 634,825
10999
mRNA_2632: 11000 - Hypothetical Protein, at 636,103 to 638,450
11000
mRNA_2633: 11001 - HMMPfam-Nucleotidyl transferase-PF00483,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF56112,SUPERFAMILY--SSF56784, at 638,578 to 641,420
11001
Group
Condition
mRNA
_2629
mRNA
_2630
mRNA
_2631
mRNA
_2632
mRNA
_2633
10997
10998
10999
11000
11001
growth on ypd
YPD
-0.7
-0.1
-0.4
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-1.5
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-1.2
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-0.9
-0.0
+0.0
auxotrophy
Dropout Complete
-0.6
-0.3
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
-0.5
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.3
-1.4
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
-0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.1
-0.1
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.4
+0.0
-0.1
-0.1
auxotrophy
YNB Glucose
-0.4
-0.1
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.2
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
-0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.2
-0.6
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.2
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.4
+0.2
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
+0.5
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
-0.1
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.2
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.4
+0.3
+0.1
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