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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10998 and 10999 are separated by 476 nucleotides
10999 and 11000 are separated by 1277 nucleotides
11000 and 11001 are separated by 127 nucleotides
11001 and 11002 are separated by 313 nucleotides
mRNA_2630: 10998 - KOG1581 UDP-galactose transporter related protein, at 629,452 to 632,288
10998
mRNA_2631: 10999 - K14803 PTC2_3 protein phosphatase PTC2/3, at 632,765 to 634,825
10999
mRNA_2632: 11000 - Hypothetical Protein, at 636,103 to 638,450
11000
mRNA_2633: 11001 - HMMPfam-Nucleotidyl transferase-PF00483,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF56112,SUPERFAMILY--SSF56784, at 638,578 to 641,420
11001
mRNA_2634: 11002 - KOG2234 Predicted UDP-galactose transporter, at 641,734 to 644,523
11002
Group
Condition
mRNA
_2630
mRNA
_2631
mRNA
_2632
mRNA
_2633
mRNA
_2634
10998
10999
11000
11001
11002
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-1.5
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-1.4
+0.3
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-1.2
-0.0
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.9
-0.0
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.5
-0.0
+0.0
-0.1
growth on ypd
YPD
-0.1
-0.4
-0.4
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.4
+0.0
-0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.6
+0.1
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.3
+0.1
+0.1
-0.3
auxotrophy
Dropout Complete
-0.3
+0.1
+0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
+0.0
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.2
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.0
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
+0.2
-0.0
-0.0
auxotrophy
YNB Glucose
-0.1
+0.1
+0.2
+0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.5
-0.1
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.4
+0.3
+0.1
+0.3
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