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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11001 and 11002 are separated by 313 nucleotides
11002 and 11003 are separated by 115 nucleotides
11003 and 11004 are separated by 251 nucleotides
11004 and 11005 are separated by 179 nucleotides
mRNA_2633: 11001 - HMMPfam-Nucleotidyl transferase-PF00483,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF56112,SUPERFAMILY--SSF56784, at 638,578 to 641,420
11001
mRNA_2634: 11002 - KOG2234 Predicted UDP-galactose transporter, at 641,734 to 644,523
11002
mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644,639 to 646,229
11003
mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646,481 to 649,252
11004
mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649,432 to 650,669
11005
Group
Condition
mRNA
_2633
mRNA
_2634
mRNA
_2635
mRNA
_2636
mRNA
_2637
11001
11002
11003
11004
11005
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.6
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
-0.3
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.3
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.3
+0.1
-0.3
auxotrophy
Dropout Complete
-0.2
+0.2
-0.3
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
-0.1
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
-0.3
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
-0.2
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-0.0
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
-0.4
+0.2
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.5
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.3
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.0
+0.1
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
-0.1
+0.0
+0.1
auxotrophy
YNB Glucose
+0.1
+0.4
-0.1
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.1
+0.2
+0.2
+0.0
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