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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11002 and 11003 are separated by 115 nucleotides
11003 and 11004 are separated by 251 nucleotides
11004 and 11005 are separated by 179 nucleotides
11005 and 11006 are separated by 276 nucleotides
mRNA_2634: 11002 - KOG2234 Predicted UDP-galactose transporter, at 641,734 to 644,523
11002
mRNA_2635: 11003 - KOG2615 Permease of the major facilitator superfamily, at 644,639 to 646,229
11003
mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646,481 to 649,252
11004
mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649,432 to 650,669
11005
mRNA_2638: 11006 - SMART-heat shock factor-SM00415, at 650,946 to 653,673
11006
Group
Condition
mRNA
_2634
mRNA
_2635
mRNA
_2636
mRNA
_2637
mRNA
_2638
11002
11003
11004
11005
11006
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
-0.3
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.6
-0.0
-0.4
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.3
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
-0.0
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.3
+0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
-0.0
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.1
+0.0
+0.2
auxotrophy
Dropout Complete
+0.2
-0.3
+0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.0
+0.1
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
+0.1
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.4
+0.2
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
-0.0
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
-0.1
+0.3
auxotrophy
YNB Glucose
+0.4
-0.1
+0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
+0.0
+0.1
+0.1
growth on ypd
YPD
+0.1
+0.2
+0.2
+0.0
+0.1
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