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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11007 and 11008 are separated by 920 nucleotides
11008 and 11009 are separated by 282 nucleotides
11009 and 11010 are separated by 523 nucleotides
11010 and 11011 are separated by 266 nucleotides
mRNA_2639: 11007 - HMMPfam-Glycosyl hydrolase family 26-PF02156,SUPERFAMILY--SSF51445, at 654,513 to 656,042
11007
mRNA_2640: 11008 - Hypothetical Protein, at 656,963 to 657,920
11008
mRNA_2641: 11009 - Hypothetical Protein, at 658,203 to 659,346
11009
mRNA_2642: 11010 - K17428 MRPL47, NCM1 large subunit ribosomal protein L47, at 659,870 to 660,906
11010
mRNA_2643: 11011 - K01254 LTA4H leukotriene-A4 hydrolase, at 661,173 to 664,262
11011
Group
Condition
mRNA
_2639
mRNA
_2640
mRNA
_2641
mRNA
_2642
mRNA
_2643
11007
11008
11009
11010
11011
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.6
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
+0.5
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.2
+0.6
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.0
-0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.0
+0.7
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.4
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.4
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
+0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.4
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.2
N.D.
+0.0
auxotrophy
Dropout Complete
-0.1
-0.2
+0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.5
N.D.
+0.1
growth on ypd
YPD
+0.0
+0.2
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose
-0.1
-0.0
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
+0.3
N.D.
+0.3
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