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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11010 and 11011 are separated by 266 nucleotides
11011 and 11012 are separated by 169 nucleotides
11012 and 11013 are separated by 325 nucleotides
11013 and 11014 are separated by 280 nucleotides
mRNA_2642: 11010 - K17428 MRPL47, NCM1 large subunit ribosomal protein L47, at 659,870 to 660,906
11010
mRNA_2643: 11011 - K01254 LTA4H leukotriene-A4 hydrolase, at 661,173 to 664,262
11011
mRNA_2644: 11012 - SUPERFAMILY--SSF52058, at 664,432 to 665,418
11012
mRNA_2645: 11013 - Hypothetical Protein, at 665,744 to 666,738
11013
mRNA_2646: 11014 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058, at 667,019 to 668,057
11014
Group
Condition
mRNA
_2642
mRNA
_2643
mRNA
_2644
mRNA
_2645
mRNA
_2646
11010
11011
11012
11013
11014
auxotrophy
Dropout Complete
N.D.
-0.1
-0.8
-0.7
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-1.6
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.9
-0.5
-0.8
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.7
-0.4
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-1.3
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.8
+0.0
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.7
+0.1
-0.5
auxotrophy
YNB Glucose
N.D.
+0.3
-0.9
-0.2
-0.7
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.7
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.4
-0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
+0.5
+0.8
-1.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.0
+0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.7
-0.9
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.4
-0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
+0.4
+0.7
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.8
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.3
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+1.0
+0.5
-1.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.7
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.4
-0.2
+0.8
growth on ypd
YPD
N.D.
-0.1
+0.2
+0.2
+1.0
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