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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11013 and 11014 are separated by 280 nucleotides
11014 and 11015 are separated by 439 nucleotides
11015 and 11016 are separated by 315 nucleotides
11016 and 11017 are separated by 2530 nucleotides
mRNA_2645: 11013 - Hypothetical Protein, at 665,744 to 666,738
11013
mRNA_2646: 11014 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058, at 667,019 to 668,057
11014
mRNA_2647: 11015 - Hypothetical Protein, at 668,497 to 669,102
11015
mRNA_2648: 11016 - SUPERFAMILY--SSF52058, at 669,418 to 670,426
11016
mRNA_2649: 11017 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 672,957 to 675,080
11017
Group
Condition
mRNA
_2645
mRNA
_2646
mRNA
_2647
mRNA
_2648
mRNA
_2649
11013
11014
11015
11016
11017
auxotrophy
Dropout Complete
-0.7
-1.4
+0.2
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.5
-0.7
-0.7
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+1.1
-0.7
-0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
-0.5
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.8
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-1.5
+0.1
+0.2
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-1.3
+0.4
-0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.6
+0.2
-0.5
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.3
-0.5
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.8
-0.9
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.3
+0.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.8
+0.9
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
-0.3
+0.4
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.6
+0.6
+0.1
+0.2
auxotrophy
YNB Glucose
-0.2
-0.7
+1.3
-0.2
+0.3
growth on oleic acid
YNB Glucose
+0.0
-0.4
+1.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
+1.9
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
+2.9
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.7
+3.0
-0.1
-0.1
growth on ypd
YPD
+0.2
+1.0
+1.5
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.5
+2.9
+0.2
+0.0
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