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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11016 and 11017 are separated by 2530 nucleotides
11017 and 11018 are separated by 1598 nucleotides
11018 and 11019 are separated by 564 nucleotides
11019 and 11020 are separated by 241 nucleotides
mRNA_2648: 11016 - SUPERFAMILY--SSF52058, at 669,418 to 670,426
11016
mRNA_2649: 11017 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 672,957 to 675,080
11017
mRNA_2650: 11018 - BLAST Plasma membrane fusion protein PRM1 [Grifola frondosa], at 676,679 to 679,842
11018
mRNA_2651: 11019 - Hypothetical Protein, at 680,407 to 680,751
11019
mRNA_2652: 11020 - Hypothetical Protein, at 680,993 to 681,631
11020
Group
Condition
mRNA
_2648
mRNA
_2649
mRNA
_2650
mRNA
_2651
mRNA
_2652
11016
11017
11018
11019
11020
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.6
-0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
-0.1
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.8
-0.0
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.6
+0.4
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.2
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.3
-0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.2
-0.2
N.D.
growth on ypd
YPD
-0.1
-0.4
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.1
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.0
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
+0.1
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
+0.0
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
+0.1
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.2
+0.1
N.D.
auxotrophy
Dropout Complete
-0.1
+0.0
-0.1
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.1
+0.4
N.D.
auxotrophy
YNB Glucose
-0.2
+0.3
+0.1
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.1
+0.6
N.D.
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