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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11017 and 11018 are separated by 1598 nucleotides
11018 and 11019 are separated by 564 nucleotides
11019 and 11020 are separated by 241 nucleotides
11020 and 11021 are separated by 559 nucleotides
mRNA_2649: 11017 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 672,957 to 675,080
11017
mRNA_2650: 11018 - BLAST Plasma membrane fusion protein PRM1 [Grifola frondosa], at 676,679 to 679,842
11018
mRNA_2651: 11019 - Hypothetical Protein, at 680,407 to 680,751
11019
mRNA_2652: 11020 - Hypothetical Protein, at 680,993 to 681,631
11020
mRNA_2653: 11021 - K15040 VDAC2 voltage-dependent anion channel protein 2, at 682,191 to 683,966
11021
Group
Condition
mRNA
_2649
mRNA
_2650
mRNA
_2651
mRNA
_2652
mRNA
_2653
11017
11018
11019
11020
11021
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.2
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.0
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.4
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.2
N.D.
N.D.
growth on ypd
YPD
-0.4
-0.1
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.0
-0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
-0.1
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
+0.6
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
+0.1
+0.6
N.D.
N.D.
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