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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11018 and 11019 are separated by 564 nucleotides
11019 and 11020 are separated by 241 nucleotides
11020 and 11021 are separated by 559 nucleotides
11021 and 11022 are separated by 1194 nucleotides
mRNA_2650: 11018 - BLAST Plasma membrane fusion protein PRM1 [Grifola frondosa], at 676,679 to 679,842
11018
mRNA_2651: 11019 - Hypothetical Protein, at 680,407 to 680,751
11019
mRNA_2652: 11020 - Hypothetical Protein, at 680,993 to 681,631
11020
mRNA_2653: 11021 - K15040 VDAC2 voltage-dependent anion channel protein 2, at 682,191 to 683,966
11021
mRNA_2654: 11022 - K00864 glpK, GK glycerol kinase, at 685,161 to 688,307
11022
Group
Condition
mRNA
_2650
mRNA
_2651
mRNA
_2652
mRNA
_2653
mRNA
_2654
11018
11019
11020
11021
11022
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.3
N.D.
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
N.D.
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
N.D.
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
-0.4
N.D.
N.D.
+0.1
growth on ypd
YPD
-0.1
+0.1
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
N.D.
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.2
+0.1
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
-0.1
+0.4
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.5
N.D.
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose
+0.1
+0.6
N.D.
N.D.
+0.2
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