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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11022 and 11023 are separated by 403 nucleotides
11023 and 11024 are separated by 147 nucleotides
11024 and 11025 are separated by 483 nucleotides
11025 and 11026 are separated by 265 nucleotides
mRNA_2654: 11022 - K00864 glpK, GK glycerol kinase, at 685,161 to 688,307
11022
mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688,711 to 690,606
11023
mRNA_2656: 11024 - KOG3417 Ras1 guanine nucleotide exchange factor, at 690,754 to 695,161
11024
mRNA_2657: 11025 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 695,645 to 696,729
11025
mRNA_2658: 11026 - BLAST transmembrane amino acid transporter protein [Rhizoct..., at 696,995 to 699,580
11026
Group
Condition
mRNA
_2654
mRNA
_2655
mRNA
_2656
mRNA
_2657
mRNA
_2658
11022
11023
11024
11025
11026
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.6
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.1
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.0
N.D.
-0.2
growth on ypd
YPD
-0.2
+0.2
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.5
+0.3
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.7
+0.5
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.2
-0.5
+0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.8
+0.4
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-1.0
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.5
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.1
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
-0.2
+0.3
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
+0.6
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
+0.5
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
+0.3
N.D.
+0.2
auxotrophy
YNB Glucose
+0.2
+0.1
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
+0.8
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+1.0
N.D.
+0.1
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