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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11023 and 11024 are separated by 147 nucleotides
11024 and 11025 are separated by 483 nucleotides
11025 and 11026 are separated by 265 nucleotides
11026 and 11027 are separated by 69 nucleotides
mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688,711 to 690,606
11023
mRNA_2656: 11024 - KOG3417 Ras1 guanine nucleotide exchange factor, at 690,754 to 695,161
11024
mRNA_2657: 11025 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 695,645 to 696,729
11025
mRNA_2658: 11026 - BLAST transmembrane amino acid transporter protein [Rhizoct..., at 696,995 to 699,580
11026
mRNA_2659: 11027 - Hypothetical Protein, at 699,650 to 700,523
11027
Group
Condition
mRNA
_2655
mRNA
_2656
mRNA
_2657
mRNA
_2658
mRNA
_2659
11023
11024
11025
11026
11027
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.2
N.D.
-0.1
-0.5
growth on oleic acid
YNB Glucose
-0.5
+0.2
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.4
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.1
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.0
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.3
N.D.
-0.3
+0.3
growth on ypd
YPD
+0.2
-0.0
N.D.
-0.5
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.6
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
N.D.
-0.1
-0.1
auxotrophy
Dropout Complete
-0.2
+0.3
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.5
N.D.
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.5
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose
+0.1
+0.3
N.D.
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.3
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.8
N.D.
+0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+1.0
N.D.
+0.1
+0.0
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