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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11029 and 11030 are separated by 1049 nucleotides
11030 and 11031 are separated by 525 nucleotides
11031 and 11032 are separated by 752 nucleotides
11032 and 11033 are separated by 1158 nucleotides
mRNA_2661: 11029 - Interpro GDP-fucose protein O-fucosyltransferase, at 702,625 to 704,593
11029
mRNA_2662: 11030 - Interpro Bacterial protein of unknown function (HtrL_YibB), at 705,643 to 707,120
11030
mRNA_2663: 11031 - Hypothetical Protein, at 707,646 to 708,293
11031
mRNA_2664: 11032 - Hypothetical Protein, at 709,046 to 711,250
11032
mRNA_2665: 11033 - HMMPfam-Protein of unknown function (DUF3431)-PF11913, at 712,409 to 714,651
11033
Group
Condition
mRNA
_2661
mRNA
_2662
mRNA
_2663
mRNA
_2664
mRNA
_2665
11029
11030
11031
11032
11033
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-1.0
+0.5
-0.6
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.3
-0.6
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.0
-0.5
+0.3
auxotrophy
Dropout Complete
+0.5
+0.3
-0.4
-0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.2
-0.7
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
-0.0
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
+0.2
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
-0.3
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.9
+0.2
+0.1
+0.7
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
-0.3
+0.2
+0.1
growth on ypd
YPD
+0.2
-0.1
+0.5
-0.3
+0.4
auxotrophy
YNB Glucose
+0.8
+0.4
-0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
-0.3
-0.6
+0.3
+0.5
growth on oleic acid
YNB Glucose
+0.4
+0.5
-0.1
-0.4
+0.4
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
+0.1
-0.4
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.7
-0.4
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.0
+0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
+0.2
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-0.3
-0.1
+0.4
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
-0.1
+0.1
+0.1
+0.7
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