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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11032 and 11033 are separated by 1158 nucleotides
11033 and 11034 are separated by 357 nucleotides
11034 and 11035 are separated by 593 nucleotides
11035 and 11036 are separated by 109 nucleotides
mRNA_2664: 11032 - Hypothetical Protein, at 709,046 to 711,250
11032
mRNA_2665: 11033 - HMMPfam-Protein of unknown function (DUF3431)-PF11913, at 712,409 to 714,651
11033
mRNA_2666: 11034 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 715,009 to 717,266
11034
mRNA_2667: 11035 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 717,860 to 720,887
11035
mRNA_2668: 11036 - K00049 GRHPR glyoxylate/hydroxypyruvate reductase, at 720,997 to 722,358
11036
Group
Condition
mRNA
_2664
mRNA
_2665
mRNA
_2666
mRNA
_2667
mRNA
_2668
11032
11033
11034
11035
11036
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
-0.1
-0.1
+0.0
auxotrophy
Dropout Complete
-0.0
-0.4
-0.2
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.6
-0.1
-0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.3
-0.2
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.6
-0.1
-0.0
-0.3
auxotrophy
YNB Glucose
+0.1
-0.2
-0.4
-0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
-0.0
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.2
+0.1
-0.0
-0.2
growth on ypd
YPD
-0.3
+0.4
+0.1
-0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
+0.0
+0.2
-0.2
growth on oleic acid
YNB Glucose
-0.4
+0.4
-0.0
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-0.1
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.2
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-0.1
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.2
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.1
-0.0
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
+0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
+0.1
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.5
-0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.7
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.9
+0.1
+0.2
+0.5
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