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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11034 and 11035 are separated by 593 nucleotides
11035 and 11036 are separated by 109 nucleotides
11036 and 11037 are separated by 290 nucleotides
11037 and 11038 are separated by 338 nucleotides
mRNA_2666: 11034 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 715,009 to 717,266
11034
mRNA_2667: 11035 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 717,860 to 720,887
11035
mRNA_2668: 11036 - K00049 GRHPR glyoxylate/hydroxypyruvate reductase, at 720,997 to 722,358
11036
mRNA_2669: 11037 - Hypothetical Protein, at 722,649 to 723,844
11037
mRNA_2670: 11038 - SUPERFAMILY--SSF52058, at 724,183 to 725,340
11038
Group
Condition
mRNA
_2666
mRNA
_2667
mRNA
_2668
mRNA
_2669
mRNA
_2670
11034
11035
11036
11037
11038
auxotrophy
YNB Glucose
-0.4
-0.0
+0.3
-0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.0
-0.2
-0.6
auxotrophy
Dropout Complete
-0.2
-0.1
+0.0
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
-0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.3
-0.5
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
+0.2
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
+0.0
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
-0.3
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
-0.1
+0.2
-0.2
+0.0
growth on ypd
YPD
+0.1
-0.4
+0.2
+0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.5
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
+0.5
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.2
+0.5
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.3
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
-0.0
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.0
+0.4
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.5
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.2
+0.3
+1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
+0.0
+1.0
+1.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
-0.0
+0.7
+0.9
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