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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11035 and 11036 are separated by 109 nucleotides
11036 and 11037 are separated by 290 nucleotides
11037 and 11038 are separated by 338 nucleotides
11038 and 11039 are separated by 952 nucleotides
mRNA_2667: 11035 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 717,860 to 720,887
11035
mRNA_2668: 11036 - K00049 GRHPR glyoxylate/hydroxypyruvate reductase, at 720,997 to 722,358
11036
mRNA_2669: 11037 - Hypothetical Protein, at 722,649 to 723,844
11037
mRNA_2670: 11038 - SUPERFAMILY--SSF52058, at 724,183 to 725,340
11038
mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726,293 to 729,723
11039
Group
Condition
mRNA
_2667
mRNA
_2668
mRNA
_2669
mRNA
_2670
mRNA
_2671
11035
11036
11037
11038
11039
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-0.5
-0.1
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.5
+0.0
-0.1
-1.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.2
-0.6
-0.1
auxotrophy
YNB Glucose
-0.0
+0.3
-0.3
-0.7
-0.1
auxotrophy
Dropout Complete
-0.1
+0.0
-0.4
-0.1
-0.0
growth on ypd
YPD
-0.4
+0.2
+0.4
-0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
-0.4
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
-0.2
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
+0.1
+0.3
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.2
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.5
-0.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.5
-0.6
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
-0.1
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.4
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
+0.3
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.3
+1.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
+0.4
+0.8
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.0
+1.0
+1.2
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
+0.7
+0.9
-0.3
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