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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11037 and 11038 are separated by 338 nucleotides
11038 and 11039 are separated by 952 nucleotides
11039 and 11040 are separated by 857 nucleotides
11040 and 11041 are separated by 800 nucleotides
mRNA_2669: 11037 - Hypothetical Protein, at 722,649 to 723,844
11037
mRNA_2670: 11038 - SUPERFAMILY--SSF52058, at 724,183 to 725,340
11038
mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726,293 to 729,723
11039
mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730,581 to 733,538
11040
mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734,339 to 738,341
11041
Group
Condition
mRNA
_2669
mRNA
_2670
mRNA
_2671
mRNA
_2672
mRNA
_2673
11037
11038
11039
11040
11041
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-1.3
-1.8
N.D.
auxotrophy
YNB Glucose
-0.3
-0.7
-0.1
-1.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.6
-0.1
-1.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.2
-1.7
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
-0.1
-1.2
N.D.
auxotrophy
Dropout Complete
-0.4
-0.1
-0.0
-1.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
-0.7
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
-0.2
-0.7
N.D.
growth on ypd
YPD
+0.4
-0.4
-0.3
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-0.4
-0.7
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.0
+0.2
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.8
-0.9
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.6
-0.0
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.4
+0.1
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.4
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.8
+0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
+0.1
+0.8
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.9
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+1.2
-0.2
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
+1.2
-0.6
+0.9
N.D.
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