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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11040 and 11041 are separated by 800 nucleotides
11041 and 11042 are separated by 454 nucleotides
11042 and 11043 are separated by 1382 nucleotides
11043 and 11044 are separated by 1059 nucleotides
mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730,581 to 733,538
11040
mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734,339 to 738,341
11041
mRNA_2674: 11042 - Hypothetical Protein, at 738,796 to 742,591
11042
mRNA_2675: 11043 - HMMPfam-Putative adipose-regulatory protein (Seipin)-PF06775, at 743,974 to 745,972
11043
mRNA_2676: 11044 - K06672 SCC2, NIPBL cohesin loading factor subunit SCC2, at 747,032 to 753,386
11044
Group
Condition
mRNA
_2672
mRNA
_2673
mRNA
_2674
mRNA
_2675
mRNA
_2676
11040
11041
11042
11043
11044
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.8
N.D.
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose
-1.5
N.D.
+0.1
+0.0
N.D.
auxotrophy
Dropout Complete
-1.1
N.D.
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-1.7
N.D.
+0.2
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
-0.0
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.3
N.D.
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-1.2
N.D.
-0.0
+0.2
N.D.
growth on ypd
YPD
-0.6
N.D.
+0.2
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.1
-0.0
N.D.
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.1
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.0
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.4
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
N.D.
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
N.D.
+0.1
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
N.D.
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
+0.2
+2.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
N.D.
+0.2
+1.1
N.D.
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