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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11042 and 11043 are separated by 1382 nucleotides
11043 and 11044 are separated by 1059 nucleotides
11044 and 11045 are separated by 3601 nucleotides
11045 and 11046 are separated by 628 nucleotides
mRNA_2674: 11042 - Hypothetical Protein, at 738,796 to 742,591
11042
mRNA_2675: 11043 - HMMPfam-Putative adipose-regulatory protein (Seipin)-PF06775, at 743,974 to 745,972
11043
mRNA_2676: 11044 - K06672 SCC2, NIPBL cohesin loading factor subunit SCC2, at 747,032 to 753,386
11044
mRNA_2677: 11045 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 756,988 to 757,590
11045
mRNA_2678: 11046 - KOG3102 Uncharacterized conserved protein, at 758,219 to 759,317
11046
Group
Condition
mRNA
_2674
mRNA
_2675
mRNA
_2676
mRNA
_2677
mRNA
_2678
11042
11043
11044
11045
11046
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
-0.5
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.5
N.D.
-0.0
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
N.D.
+0.8
-2.0
growth on oleic acid
YNB Glucose
+0.1
-0.0
N.D.
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
+0.6
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.4
N.D.
-0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
-0.6
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
N.D.
-0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
N.D.
-0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
N.D.
+1.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
N.D.
+0.4
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.7
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
N.D.
+0.7
+0.2
auxotrophy
YNB Glucose
+0.1
+0.0
N.D.
+0.8
+0.2
auxotrophy
Dropout Complete
-0.1
-0.1
N.D.
+1.0
+0.6
growth on ypd
YPD
+0.2
-0.1
N.D.
+1.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+2.4
N.D.
-0.3
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+1.1
N.D.
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
N.D.
+1.1
+0.6
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