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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11048 and 11049 are separated by 710 nucleotides
11049 and 11050 are separated by 996 nucleotides
11050 and 11051 are separated by 175 nucleotides
11051 and 11052 are separated by 704 nucleotides
mRNA_2680: 11048 - Hypothetical Protein, at 764,065 to 765,232
11048
mRNA_2681: 11049 - Hypothetical Protein, at 765,943 to 766,697
11049
mRNA_2682: 11050 - K00589 MET1 uroporphyrin-III C-methyltransferase, at 767,694 to 769,770
11050
mRNA_2683: 11051 - K07300 chaA, CAX Ca2+-H+ antiporter, at 769,946 to 774,939
11051
mRNA_2684: 11052 - K02144 ATPeV1H V-type H+-transporting ATPase subunit H, at 775,644 to 777,796
11052
Group
Condition
mRNA
_2680
mRNA
_2681
mRNA
_2682
mRNA
_2683
mRNA
_2684
11048
11049
11050
11051
11052
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
-3.7
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.3
-2.0
-0.3
N.D.
auxotrophy
YNB Glucose
-0.3
+0.1
-2.8
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-2.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.4
-1.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.4
-2.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.3
-2.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
-0.9
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.0
-1.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.8
-1.5
+0.3
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.4
-0.4
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
-0.3
+0.0
N.D.
growth on ypd
YPD
+0.2
+0.5
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.8
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
+1.7
+0.2
N.D.
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