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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11056 and 11057 are separated by 264 nucleotides
11057 and 11058 are separated by 1408 nucleotides
11058 and 11059 are separated by 964 nucleotides
11059 and 11060 are separated by 195 nucleotides
mRNA_2688: 11056 - Hypothetical Protein, at 8,682 to 9,968
11056
mRNA_2689: 11057 - K07422 CYP2U1 cytochrome P450, family 2, subfamily U, polypeptide 1, at 10,233 to 12,338
11057
mRNA_2690: 11058 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 13,747 to 14,595
11058
mRNA_2691: 11059 - Hypothetical Protein, at 15,560 to 16,423
11059
mRNA_2692: 11060 - K06656 PCL1 G1/S-specific cyclin PLC1, at 16,619 to 17,964
11060
Group
Condition
mRNA
_2688
mRNA
_2689
mRNA
_2690
mRNA
_2691
mRNA
_2692
11056
11057
11058
11059
11060
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
-0.4
-0.1
+0.0
-0.0
growth on ypd
YPD
-1.7
-0.1
+0.1
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
-0.8
+0.0
+0.1
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
+0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.1
+0.0
+0.1
+0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+0.0
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.0
+0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
+0.0
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.1
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.0
+0.1
+0.0
-0.5
auxotrophy
YNB Glucose
+0.2
+0.0
-0.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.0
-0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
+0.0
+0.0
+0.2
growth on oleic acid
YNB Glucose
+0.9
-0.0
+0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
+0.1
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.7
+0.1
+0.0
-0.1
+0.2
auxotrophy
Dropout Complete
+1.4
+0.1
-0.0
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.9
+0.0
+0.0
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
+0.2
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
+0.1
+0.1
+0.3
+0.6
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