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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11059 and 11060 are separated by 195 nucleotides
11060 and 11061 are separated by 649 nucleotides
11061 and 11062 are separated by 395 nucleotides
11062 and 11063 are separated by 1444 nucleotides
mRNA_2691: 11059 - Hypothetical Protein, at 15,560 to 16,423
11059
mRNA_2692: 11060 - K06656 PCL1 G1/S-specific cyclin PLC1, at 16,619 to 17,964
11060
mRNA_2693: 11061 - K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1, at 18,614 to 20,530
11061
mRNA_2694: 11062 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 20,926 to 22,511
11062
mRNA_2695: 11063 - Hypothetical Protein, at 23,956 to 24,690
11063
Group
Condition
mRNA
_2691
mRNA
_2692
mRNA
_2693
mRNA
_2694
mRNA
_2695
11059
11060
11061
11062
11063
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
+0.0
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.5
+0.0
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.4
+0.1
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.0
-0.2
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
+0.2
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.1
-0.0
+0.5
-0.3
auxotrophy
Dropout Complete
-0.1
-0.2
+0.2
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
+0.2
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.3
+0.0
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.1
+0.4
-0.4
growth on ypd
YPD
-0.1
+0.3
-0.2
+0.3
-0.1
auxotrophy
YNB Glucose
-0.0
+0.1
+0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
+0.3
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
-0.1
+0.7
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.1
+0.6
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
+0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
+0.1
-0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
+0.0
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
+0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
+0.1
-0.0
+0.3
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