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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11061 and 11062 are separated by 395 nucleotides
11062 and 11063 are separated by 1444 nucleotides
11063 and 11064 are separated by 1096 nucleotides
11064 and 11065 are separated by 890 nucleotides
mRNA_2693: 11061 - K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1, at 18,614 to 20,530
11061
mRNA_2694: 11062 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 20,926 to 22,511
11062
mRNA_2695: 11063 - Hypothetical Protein, at 23,956 to 24,690
11063
mRNA_2696: 11064 - K02147 ATPeV1B, ATP6B V-type H+-transporting ATPase subunit B, at 25,787 to 28,355
11064
mRNA_2697: 11065 - Hypothetical Protein, at 29,246 to 31,443
11065
Group
Condition
mRNA
_2693
mRNA
_2694
mRNA
_2695
mRNA
_2696
mRNA
_2697
11061
11062
11063
11064
11065
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.0
+0.5
-0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
+0.4
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
-0.4
N.D.
+0.2
growth on ypd
YPD
-0.2
+0.3
-0.1
N.D.
+0.2
auxotrophy
Dropout Complete
+0.2
+0.3
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.3
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.3
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.6
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose
+0.1
+0.2
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.4
-0.0
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.7
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.4
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
+0.2
N.D.
+0.1
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