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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11064 and 11065 are separated by 890 nucleotides
11065 and 11066 are separated by 333 nucleotides
11066 and 11067 are separated by 1229 nucleotides
11067 and 11068 are separated by 1034 nucleotides
mRNA_2696: 11064 - K02147 ATPeV1B, ATP6B V-type H+-transporting ATPase subunit B, at 25,787 to 28,355
11064
mRNA_2697: 11065 - Hypothetical Protein, at 29,246 to 31,443
11065
mRNA_2698: 11066 - Hypothetical Protein, at 31,777 to 32,871
11066
mRNA_2699: 11067 - K08066 NFYC nuclear transcription factor Y, gamma, at 34,101 to 34,789
11067
mRNA_2700: 11068 - K03019 RPC11, POLR3K DNA-directed RNA polymerase III subunit RPC11, at 35,824 to 36,615
11068
Group
Condition
mRNA
_2696
mRNA
_2697
mRNA
_2698
mRNA
_2699
mRNA
_2700
11064
11065
11066
11067
11068
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.6
-3.8
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.6
-1.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
-0.1
-1.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.4
-1.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.1
-0.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.4
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.4
-0.6
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.3
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.3
-0.4
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose
N.D.
+0.2
+0.2
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.5
+0.7
N.D.
auxotrophy
Dropout Complete
N.D.
+0.1
+0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.6
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
+0.6
-0.2
N.D.
growth on ypd
YPD
N.D.
+0.2
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.1
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.6
+0.8
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.3
+1.8
N.D.
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