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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11069 and 11070 are separated by 333 nucleotides
11070 and 11071 are separated by 298 nucleotides
11071 and 11072 are separated by 868 nucleotides
11072 and 11073 are separated by 622 nucleotides
mRNA_2701: 11069 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 37,743 to 40,782
11069
mRNA_2702: 11070 - BLAST TRAF-like [Xanthophyllomyces dendrorhous], at 41,116 to 42,334
11070
mRNA_2703: 11071 - Hypothetical Protein, at 42,633 to 43,267
11071
mRNA_2704: 11072 - SUPERFAMILY--SSF54695, at 44,136 to 45,724
11072
mRNA_2705: 11073 - Hypothetical Protein, at 46,347 to 46,971
11073
Group
Condition
mRNA
_2701
mRNA
_2702
mRNA
_2703
mRNA
_2704
mRNA
_2705
11069
11070
11071
11072
11073
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.6
-0.2
-0.8
-0.2
-0.2
auxotrophy
YNB Glucose
-3.7
+0.1
-0.3
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-2.6
-0.1
-0.4
+0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.4
-0.2
-0.4
-0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-2.2
+0.2
-0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-2.5
+0.0
-0.4
+0.1
+0.2
growth on oleic acid
YNB Glucose
-2.2
-0.0
-0.0
+0.2
-0.2
auxotrophy
Dropout Complete
-2.0
-0.2
-0.6
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.1
-0.1
+0.0
+0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-1.8
-0.2
-0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-1.5
+0.2
-0.1
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.3
-0.3
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
+0.5
-0.6
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.5
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
+0.2
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.5
-0.0
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.1
+0.2
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.8
-0.1
+0.3
-0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+1.3
+0.3
-0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.5
+0.5
-0.4
+0.0
-0.1
growth on ypd
YPD
+2.5
-0.2
-0.4
-0.1
+0.1
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