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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11072 and 11073 are separated by 622 nucleotides
11073 and 11074 are separated by 328 nucleotides
11074 and 11075 are separated by 445 nucleotides
11075 and 11076 are separated by 1440 nucleotides
mRNA_2704: 11072 - SUPERFAMILY--SSF54695, at 44,136 to 45,724
11072
mRNA_2705: 11073 - Hypothetical Protein, at 46,347 to 46,971
11073
mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47,300 to 48,078
11074
mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48,524 to 50,718
11075
mRNA_2708: 11076 - Hypothetical Protein, at 52,159 to 52,641
11076
Group
Condition
mRNA
_2704
mRNA
_2705
mRNA
_2706
mRNA
_2707
mRNA
_2708
11072
11073
11074
11075
11076
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.1
-0.0
-4.9
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.0
+0.0
-0.4
-1.4
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
-0.2
-0.8
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.0
-1.4
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
-0.3
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.2
-0.2
-0.1
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
+0.2
-1.4
+1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-0.3
+1.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
+0.1
+0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
-0.2
+0.3
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.4
+0.4
-0.1
auxotrophy
YNB Glucose
+0.2
+0.1
+0.2
+0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
+0.2
+0.3
-0.0
auxotrophy
Dropout Complete
+0.3
+0.2
-0.3
+0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.3
-0.1
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-0.3
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.3
+0.2
+0.3
+0.8
growth on ypd
YPD
-0.1
+0.1
+0.6
+0.4
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.2
+1.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.2
+0.1
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
+0.4
+1.2
+0.3
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