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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11074 and 11075 are separated by 445 nucleotides
11075 and 11076 are separated by 1440 nucleotides
11076 and 11077 are separated by 133 nucleotides
11077 and 11078 are separated by 596 nucleotides
mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47,300 to 48,078
11074
mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48,524 to 50,718
11075
mRNA_2708: 11076 - Hypothetical Protein, at 52,159 to 52,641
11076
mRNA_2709: 11077 - Hypothetical Protein, at 52,775 to 54,075
11077
mRNA_2710: 11078 - BLAST putative protein (N-terminal fragment) [Melanopsichiu..., at 54,672 to 56,113
11078
Group
Condition
mRNA
_2706
mRNA
_2707
mRNA
_2708
mRNA
_2709
mRNA
_2710
11074
11075
11076
11077
11078
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-4.9
-0.0
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
-1.4
+0.5
-0.4
growth on ricinoleic acid
YNB Glucose
-0.2
-0.8
-0.7
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
-0.3
+0.2
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.5
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+1.0
-0.4
-0.2
-0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-1.4
+0.3
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.4
-0.1
-0.2
+0.2
auxotrophy
Dropout Complete
-0.3
+0.3
-0.0
-0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
-0.4
+0.3
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.4
-0.5
+0.3
+0.2
auxotrophy
YNB Glucose
+0.2
+0.0
-0.3
-0.2
+0.7
growth on ypd
YPD
+0.6
+0.4
+0.2
+0.0
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.5
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
-0.0
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.7
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.8
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-1.4
+1.2
+0.1
+1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
+1.2
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+1.3
-0.2
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+1.2
+0.3
+0.3
-0.3
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