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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11075 and 11076 are separated by 1440 nucleotides
11076 and 11077 are separated by 133 nucleotides
11077 and 11078 are separated by 596 nucleotides
11078 and 11079 are separated by 816 nucleotides
mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48,524 to 50,718
11075
mRNA_2708: 11076 - Hypothetical Protein, at 52,159 to 52,641
11076
mRNA_2709: 11077 - Hypothetical Protein, at 52,775 to 54,075
11077
mRNA_2710: 11078 - BLAST putative protein (N-terminal fragment) [Melanopsichiu..., at 54,672 to 56,113
11078
mRNA_2711: 11079 - K01098 CET1 polynucleotide 5'-triphosphatase, at 56,930 to 58,742
11079
Group
Condition
mRNA
_2707
mRNA
_2708
mRNA
_2709
mRNA
_2710
mRNA
_2711
11075
11076
11077
11078
11079
ypd buoyancy
40 hrs Low Buoyancy
-4.9
-0.0
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-1.4
+0.5
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.8
-0.7
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-1.4
+0.3
+0.1
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
+0.2
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.5
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
-0.4
-0.2
-0.8
N.D.
growth on ypd
YPD
+0.4
+0.2
+0.0
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.1
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose
+0.0
-0.3
-0.2
+0.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.4
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.7
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.5
+0.3
+0.2
N.D.
auxotrophy
Dropout Complete
+0.3
-0.0
-0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.8
+0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.5
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.4
+1.2
+0.1
+1.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+1.2
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
+0.3
+0.3
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+1.3
-0.2
+0.3
+0.4
N.D.
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