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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11077 and 11078 are separated by 596 nucleotides
11078 and 11079 are separated by 816 nucleotides
11079 and 11080 are separated by 180 nucleotides
11080 and 11081 are separated by 189 nucleotides
mRNA_2709: 11077 - Hypothetical Protein, at 52,775 to 54,075
11077
mRNA_2710: 11078 - BLAST putative protein (N-terminal fragment) [Melanopsichiu..., at 54,672 to 56,113
11078
mRNA_2711: 11079 - K01098 CET1 polynucleotide 5'-triphosphatase, at 56,930 to 58,742
11079
mRNA_2712: 11080 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 58,923 to 60,414
11080
mRNA_2713: 11081 - BLAST Clp1-like protein, putative [Rhizoctonia solani AG-3 ..., at 60,604 to 61,559
11081
Group
Condition
mRNA
_2709
mRNA
_2710
mRNA
_2711
mRNA
_2712
mRNA
_2713
11077
11078
11079
11080
11081
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.8
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
N.D.
-0.6
-0.1
auxotrophy
Dropout Complete
-0.1
+0.4
N.D.
+0.0
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.5
N.D.
+0.4
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.4
N.D.
+0.4
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.5
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
N.D.
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
N.D.
-0.2
+0.4
growth on ypd
YPD
+0.0
-0.7
N.D.
+0.3
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
N.D.
+0.3
+0.5
auxotrophy
YNB Glucose
-0.2
+0.7
N.D.
+0.3
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.2
N.D.
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
N.D.
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+1.0
N.D.
-0.2
+0.3
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