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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11078 and 11079 are separated by 816 nucleotides
11079 and 11080 are separated by 180 nucleotides
11080 and 11081 are separated by 189 nucleotides
11081 and 11082 are separated by 1804 nucleotides
mRNA_2710: 11078 - BLAST putative protein (N-terminal fragment) [Melanopsichiu..., at 54,672 to 56,113
11078
mRNA_2711: 11079 - K01098 CET1 polynucleotide 5'-triphosphatase, at 56,930 to 58,742
11079
mRNA_2712: 11080 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 58,923 to 60,414
11080
mRNA_2713: 11081 - BLAST Clp1-like protein, putative [Rhizoctonia solani AG-3 ..., at 60,604 to 61,559
11081
mRNA_2714: 11082 - KOG2477 Uncharacterized conserved protein, at 63,364 to 66,371
11082
Group
Condition
mRNA
_2710
mRNA
_2711
mRNA
_2712
mRNA
_2713
mRNA
_2714
11078
11079
11080
11081
11082
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
N.D.
-0.1
-0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.6
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
+0.4
-0.6
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
+0.4
-0.5
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.1
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
-0.2
+0.4
-0.6
auxotrophy
Dropout Complete
+0.4
N.D.
+0.0
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.3
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
-0.1
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
+0.0
+0.4
growth on ypd
YPD
-0.7
N.D.
+0.3
+0.6
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.4
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.3
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
+0.6
-0.2
-0.3
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.4
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.3
+0.5
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
N.D.
-0.2
+0.3
-0.2
auxotrophy
YNB Glucose
+0.7
N.D.
+0.3
+0.2
+0.1
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