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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11079 and 11080 are separated by 180 nucleotides
11080 and 11081 are separated by 189 nucleotides
11081 and 11082 are separated by 1804 nucleotides
11082 and 11083 are separated by 541 nucleotides
mRNA_2711: 11079 - K01098 CET1 polynucleotide 5'-triphosphatase, at 56,930 to 58,742
11079
mRNA_2712: 11080 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 58,923 to 60,414
11080
mRNA_2713: 11081 - BLAST Clp1-like protein, putative [Rhizoctonia solani AG-3 ..., at 60,604 to 61,559
11081
mRNA_2714: 11082 - KOG2477 Uncharacterized conserved protein, at 63,364 to 66,371
11082
mRNA_2715: 11083 - Hypothetical Protein, at 66,913 to 70,114
11083
Group
Condition
mRNA
_2711
mRNA
_2712
mRNA
_2713
mRNA
_2714
mRNA
_2715
11079
11080
11081
11082
11083
auxotrophy
Dropout Complete
N.D.
+0.0
-0.7
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.4
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.6
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.4
-0.6
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
-0.5
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.0
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.3
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.2
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
+0.2
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.6
-0.2
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.4
-0.0
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.1
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.0
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.2
-0.2
auxotrophy
YNB Glucose
N.D.
+0.3
+0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
-0.2
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.5
+0.0
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.3
+0.3
+0.1
growth on ypd
YPD
N.D.
+0.3
+0.6
-0.1
-0.1
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