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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11081 and 11082 are separated by 1804 nucleotides
11082 and 11083 are separated by 541 nucleotides
11083 and 11084 are separated by 66 nucleotides
11084 and 11085 are separated by 361 nucleotides
mRNA_2713: 11081 - BLAST Clp1-like protein, putative [Rhizoctonia solani AG-3 ..., at 60,604 to 61,559
11081
mRNA_2714: 11082 - KOG2477 Uncharacterized conserved protein, at 63,364 to 66,371
11082
mRNA_2715: 11083 - Hypothetical Protein, at 66,913 to 70,114
11083
mRNA_2716: 11084 - Hypothetical Protein, at 70,181 to 71,077
11084
mRNA_2717: 11085 - HMMPfam-Nitronate monooxygenase-PF03060,SUPERFAMILY--SSF51412, at 71,439 to 72,597
11085
Group
Condition
mRNA
_2713
mRNA
_2714
mRNA
_2715
mRNA
_2716
mRNA
_2717
11081
11082
11083
11084
11085
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
-0.3
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.6
-0.2
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.4
-0.1
-0.1
+0.0
auxotrophy
Dropout Complete
-0.7
-0.1
-0.3
-0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.4
-0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
-0.2
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.0
-0.0
-0.6
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
-0.2
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
-0.3
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.6
+0.2
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.4
-0.2
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.1
+0.2
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.3
+0.1
+0.1
auxotrophy
YNB Glucose
+0.2
+0.1
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.0
-0.3
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.3
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.2
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
-0.1
+0.3
+0.1
growth on ypd
YPD
+0.6
-0.1
-0.1
-0.1
+0.4
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