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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11087 and 11088 are separated by 348 nucleotides
11088 and 11089 are separated by 175 nucleotides
11089 and 11090 are separated by 200 nucleotides
11090 and 11091 are separated by 329 nucleotides
mRNA_2719: 11087 - Hypothetical Protein, at 74,043 to 75,833
11087
mRNA_2720: 11088 - Hypothetical Protein, at 76,182 to 76,700
11088
mRNA_2721: 11089 - BLAST metallophosphoesterase domain-containing protein [Muc..., at 76,876 to 78,981
11089
mRNA_2722: 11090 - KOG4117 Heat shock factor binding protein, at 79,182 to 79,739
11090
mRNA_2723: 11091 - K03258 EIF4B translation initiation factor 4B, at 80,069 to 82,121
11091
Group
Condition
mRNA
_2719
mRNA
_2720
mRNA
_2721
mRNA
_2722
mRNA
_2723
11087
11088
11089
11090
11091
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.0
+0.2
N.D.
N.D.
growth on ypd
YPD
-0.2
+0.0
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.2
+0.5
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.1
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.2
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
+0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
+1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.0
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
+1.2
N.D.
N.D.
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