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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11091 and 11092 are separated by 164 nucleotides
11092 and 11093 are separated by 705 nucleotides
11093 and 11094 are separated by 338 nucleotides
11094 and 11095 are separated by 268 nucleotides
mRNA_2723: 11091 - K03258 EIF4B translation initiation factor 4B, at 80,069 to 82,121
11091
mRNA_2724: 11092 - HMMPfam-Ribosomal protein L30p/L7e-PF00327,SUPERFAMILY--SSF55129, at 82,286 to 82,840
11092
mRNA_2725: 11093 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 83,546 to 84,542
11093
mRNA_2726: 11094 - K01725 cynS cyanate lyase, at 84,881 to 85,852
11094
mRNA_2727: 11095 - Hypothetical Protein, at 86,121 to 88,745
11095
Group
Condition
mRNA
_2723
mRNA
_2724
mRNA
_2725
mRNA
_2726
mRNA
_2727
11091
11092
11093
11094
11095
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-1.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
-0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.0
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
+0.1
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
+0.1
-0.2
growth on ypd
YPD
N.D.
N.D.
-0.1
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.0
+0.4
-0.2
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
+0.4
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.6
+0.3
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