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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11093 and 11094 are separated by 338 nucleotides
11094 and 11095 are separated by 268 nucleotides
11095 and 11096 are separated by 275 nucleotides
11096 and 11097 are separated by 459 nucleotides
mRNA_2725: 11093 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 83,546 to 84,542
11093
mRNA_2726: 11094 - K01725 cynS cyanate lyase, at 84,881 to 85,852
11094
mRNA_2727: 11095 - Hypothetical Protein, at 86,121 to 88,745
11095
mRNA_2728: 11096 - Hypothetical Protein, at 89,021 to 89,898
11096
mRNA_2729: 11097 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 90,358 to 92,251
11097
Group
Condition
mRNA
_2725
mRNA
_2726
mRNA
_2727
mRNA
_2728
mRNA
_2729
11093
11094
11095
11096
11097
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-1.4
+0.3
+0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.1
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.3
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
-0.3
-0.3
+0.5
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
-0.4
+0.1
auxotrophy
Dropout Complete
+0.1
+0.1
-0.2
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.4
-0.2
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.2
+0.2
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
+0.4
+0.2
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
+0.0
+0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
+0.0
+0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
-0.1
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.2
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
+0.4
-0.2
-0.2
auxotrophy
YNB Glucose
-0.1
+0.5
-0.1
+0.1
-0.0
growth on ypd
YPD
-0.1
-0.0
+0.2
+0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
-0.2
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
+0.3
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.2
-0.1
+1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
+0.3
+0.2
+0.1
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