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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11095 and 11096 are separated by 275 nucleotides
11096 and 11097 are separated by 459 nucleotides
11097 and 11098 overlap by 2 nucleotides
11098 and 11099 are separated by 10 nucleotides
mRNA_2727: 11095 - Hypothetical Protein, at 86,121 to 88,745
11095
mRNA_2728: 11096 - Hypothetical Protein, at 89,021 to 89,898
11096
mRNA_2729: 11097 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 90,358 to 92,251
11097
mRNA_2730: 11098 - Hypothetical Protein, at 92,250 to 93,018
11098
mRNA_2731: 11099 - HMMPfam-Domain of unknown function (DUF4112)-PF13430, at 93,029 to 93,911
11099
Group
Condition
mRNA
_2727
mRNA
_2728
mRNA
_2729
mRNA
_2730
mRNA
_2731
11095
11096
11097
11098
11099
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.3
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.4
+0.1
N.D.
auxotrophy
Dropout Complete
-0.2
+0.0
-0.4
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
-0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
-0.6
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.3
+0.5
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
-0.8
+0.1
N.D.
auxotrophy
YNB Glucose
-0.1
+0.1
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.5
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.4
-0.3
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.5
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.1
+0.2
N.D.
growth on ypd
YPD
+0.2
+0.4
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+1.0
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.1
+0.7
+0.2
N.D.
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mRNA_2729
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