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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11097 and 11098 overlap by 2 nucleotides
11098 and 11099 are separated by 10 nucleotides
11099 and 11100 are separated by 1517 nucleotides
11100 and 11101 are separated by 209 nucleotides
mRNA_2729: 11097 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 90,358 to 92,251
11097
mRNA_2730: 11098 - Hypothetical Protein, at 92,250 to 93,018
11098
mRNA_2731: 11099 - HMMPfam-Domain of unknown function (DUF4112)-PF13430, at 93,029 to 93,911
11099
mRNA_2732: 11100 - Hypothetical Protein, at 95,429 to 95,692
11100
mRNA_2733: 11101 - KOG0254 Predicted transporter (major facilitator superfamily), at 95,902 to 98,475
11101
Group
Condition
mRNA
_2729
mRNA
_2730
mRNA
_2731
mRNA
_2732
mRNA
_2733
11097
11098
11099
11100
11101
auxotrophy
Dropout Complete
-0.4
+0.0
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.1
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.0
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.0
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
N.D.
+0.2
+0.1
growth on ypd
YPD
+0.1
+0.2
N.D.
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.0
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.0
N.D.
+0.5
+0.2
auxotrophy
YNB Glucose
-0.0
-0.1
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
N.D.
+0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.0
N.D.
+0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.0
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
+0.4
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.2
N.D.
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+1.0
-0.2
N.D.
+0.1
-0.0
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