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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11102 and 11103 are separated by 133 nucleotides
11103 and 11104 are separated by 185 nucleotides
11104 and 11105 are separated by 280 nucleotides
11105 and 11106 are separated by 1389 nucleotides
mRNA_2734: 11102 - K14779 DDX52, ROK1 ATP-dependent RNA helicase DDX52/ROK1, at 98,768 to 101,128
11102
mRNA_2735: 11103 - K02257 COX10 protoheme IX farnesyltransferase, at 101,262 to 102,881
11103
mRNA_2736: 11104 - K11093 SNRP70 U1 small nuclear ribonucleoprotein 70kDa, at 103,067 to 104,847
11104
mRNA_2737: 11105 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 105,128 to 106,332
11105
mRNA_2738: 11106 - K20121 FNBP1 formin-binding protein 1, at 107,722 to 109,356
11106
Group
Condition
mRNA
_2734
mRNA
_2735
mRNA
_2736
mRNA
_2737
mRNA
_2738
11102
11103
11104
11105
11106
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
-0.9
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.6
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.5
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.2
-0.2
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
-0.0
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
-0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.6
-0.0
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