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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11104 and 11105 are separated by 280 nucleotides
11105 and 11106 are separated by 1389 nucleotides
11106 and 11107 are separated by 418 nucleotides
11107 and 11108 are separated by 892 nucleotides
mRNA_2736: 11104 - K11093 SNRP70 U1 small nuclear ribonucleoprotein 70kDa, at 103,067 to 104,847
11104
mRNA_2737: 11105 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 105,128 to 106,332
11105
mRNA_2738: 11106 - K20121 FNBP1 formin-binding protein 1, at 107,722 to 109,356
11106
mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109,775 to 112,160
11107
mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113,053 to 114,206
11108
Group
Condition
mRNA
_2736
mRNA
_2737
mRNA
_2738
mRNA
_2739
mRNA
_2740
11104
11105
11106
11107
11108
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.1
-0.2
-0.8
growth on ypd
YPD
N.D.
-0.1
+0.1
-0.1
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
+0.1
+0.0
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.3
-0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
+0.2
-0.0
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.3
-0.2
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.2
+0.3
-0.9
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.2
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
-0.3
-0.2
auxotrophy
Dropout Complete
N.D.
-0.1
+0.3
+0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.5
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.4
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.4
+0.1
-0.6
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.3
+0.0
-0.2
auxotrophy
YNB Glucose
N.D.
-0.0
+0.4
-0.0
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.0
-0.2
+0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
+0.3
+0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.5
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
-0.0
-0.4
+0.1
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