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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11105 and 11106 are separated by 1389 nucleotides
11106 and 11107 are separated by 418 nucleotides
11107 and 11108 are separated by 892 nucleotides
11108 and 11109 are separated by 326 nucleotides
mRNA_2737: 11105 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 105,128 to 106,332
11105
mRNA_2738: 11106 - K20121 FNBP1 formin-binding protein 1, at 107,722 to 109,356
11106
mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109,775 to 112,160
11107
mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113,053 to 114,206
11108
mRNA_2741: 11109 - HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249, at 114,533 to 117,473
11109
Group
Condition
mRNA
_2737
mRNA
_2738
mRNA
_2739
mRNA
_2740
mRNA
_2741
11105
11106
11107
11108
11109
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.1
+0.0
-0.7
-2.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.0
-0.2
+0.7
-3.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.5
+0.1
-0.5
-2.8
growth on ypd
YPD
-0.1
+0.1
-0.1
-1.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.5
-0.1
+0.4
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
-0.0
+0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
+0.1
-0.2
-0.6
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.2
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
-0.0
-0.2
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.3
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.2
-0.8
+1.3
auxotrophy
YNB Glucose
-0.0
+0.4
-0.0
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.3
-0.2
+0.5
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
+0.0
-0.2
+0.3
auxotrophy
Dropout Complete
-0.1
+0.3
+0.1
-0.6
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.2
-0.0
-0.2
+1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
+0.1
-0.6
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.0
-0.4
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.1
-0.6
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
+0.3
-0.9
+1.8
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