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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11107 and 11108 are separated by 892 nucleotides
11108 and 11109 are separated by 326 nucleotides
11109 and 11110 are separated by 191 nucleotides
11110 and 11111 are separated by 214 nucleotides
mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109,775 to 112,160
11107
mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113,053 to 114,206
11108
mRNA_2741: 11109 - HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249, at 114,533 to 117,473
11109
mRNA_2742: 11110 - K18880 HCD1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 117,665 to 118,794
11110
mRNA_2743: 11111 - KOG4491 Predicted membrane protein, at 119,009 to 120,330
11111
Group
Condition
mRNA
_2739
mRNA
_2740
mRNA
_2741
mRNA
_2742
mRNA
_2743
11107
11108
11109
11110
11111
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.5
-2.8
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.7
-2.5
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.7
-3.0
+0.2
-0.1
growth on ypd
YPD
-0.1
-1.0
-0.2
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
-0.9
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
+0.5
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
-0.2
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.5
+0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
+0.2
+0.1
-0.3
auxotrophy
YNB Glucose
-0.0
-0.5
+0.2
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
+0.4
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.2
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.6
+0.6
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
+0.8
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.6
+0.6
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.8
+1.3
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.6
+0.8
+0.2
-0.2
auxotrophy
Dropout Complete
+0.1
-0.6
+0.6
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
+1.2
+0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.9
+1.8
+0.1
-0.2
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