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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11114 and 11115 are separated by 468 nucleotides
11115 and 11116 are separated by 1516 nucleotides
11116 and 11117 are separated by 632 nucleotides
11117 and 11118 are separated by 239 nucleotides
mRNA_2746: 11114 - K00859 coaE dephospho-CoA kinase, at 127,700 to 128,562
11114
mRNA_2747: 11115 - Hypothetical Protein, at 129,031 to 129,720
11115
mRNA_2748: 11116 - KOG3772 M-phase inducer phosphatase, at 131,237 to 131,877
11116
mRNA_2749: 11117 - K02146 ATPeV0D, ATP6D V-type H+-transporting ATPase subunit d, at 132,510 to 133,901
11117
mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134,141 to 135,893
11118
Group
Condition
mRNA
_2746
mRNA
_2747
mRNA
_2748
mRNA
_2749
mRNA
_2750
11114
11115
11116
11117
11118
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-2.1
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.7
N.D.
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.6
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.1
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.4
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
+0.5
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.4
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.5
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.2
N.D.
+0.5
growth on ypd
YPD
N.D.
-0.3
+1.1
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
+1.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+1.2
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
+0.9
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+1.7
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+1.8
N.D.
+0.3
auxotrophy
YNB Glucose
N.D.
+0.3
+1.6
N.D.
+0.3
auxotrophy
Dropout Complete
N.D.
+0.1
+2.2
N.D.
+0.6
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