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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11117 and 11118 are separated by 239 nucleotides
11118 and 11119 are separated by 361 nucleotides
11119 and 11120 are separated by 500 nucleotides
11120 and 11121 are separated by 437 nucleotides
mRNA_2749: 11117 - K02146 ATPeV0D, ATP6D V-type H+-transporting ATPase subunit d, at 132,510 to 133,901
11117
mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134,141 to 135,893
11118
mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136,255 to 137,508
11119
mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138,009 to 139,329
11120
mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139,767 to 141,011
11121
Group
Condition
mRNA
_2749
mRNA
_2750
mRNA
_2751
mRNA
_2752
mRNA
_2753
11117
11118
11119
11120
11121
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.4
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.9
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.6
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
-0.3
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
+0.3
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.2
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
+0.2
-0.2
auxotrophy
YNB Glucose
N.D.
+0.3
-0.2
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
-0.2
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.7
-0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.5
-0.1
+0.2
-0.3
auxotrophy
Dropout Complete
N.D.
+0.6
-0.1
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.2
+0.4
+0.0
growth on ypd
YPD
N.D.
+0.5
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.1
+0.4
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.6
+0.0
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.7
+0.3
+0.0
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