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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11118 and 11119 are separated by 361 nucleotides
11119 and 11120 are separated by 500 nucleotides
11120 and 11121 are separated by 437 nucleotides
11121 and 11122 are separated by 131 nucleotides
mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134,141 to 135,893
11118
mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136,255 to 137,508
11119
mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138,009 to 139,329
11120
mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139,767 to 141,011
11121
mRNA_2754: 11122 - SUPERFAMILY--SSF50249, at 141,143 to 143,248
11122
Group
Condition
mRNA
_2750
mRNA
_2751
mRNA
_2752
mRNA
_2753
mRNA
_2754
11118
11119
11120
11121
11122
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.9
+0.1
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
-0.1
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.3
+0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
+0.2
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.6
+0.2
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.7
-0.1
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.3
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.0
-0.2
+0.2
growth on ypd
YPD
+0.5
-0.1
+0.1
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.3
+0.1
-0.1
-0.0
auxotrophy
YNB Glucose
+0.3
-0.2
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.2
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.2
-0.1
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.5
-0.1
+0.2
-0.3
+0.1
auxotrophy
Dropout Complete
+0.6
-0.1
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.4
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.4
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
+0.0
-0.0
+0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.7
+0.3
+0.0
-0.0
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